Department of Bioinformatics - BiGCaT Teaching Materials
This repository has a collection of tutorials and lectures related to the tools provided by or contributed to by the Department of Bioinformatics - BiGCaT at Maastricht University.
You can find the collection of materials available on TeSS, ELIXIR’s Training Portal, here.
Introductory Lectures
- Epigenetics and Gene Regulation
- Genetic Variation
- Introduction to Bioinformatics and Biological Databases
- Introduction to Bioinformatics
- Gene Expression Data Analysis
Biological Databases
Chemistry
Data Pre-Processing
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Tutorials
Identifier Mapping
- BridgeDb R Tutorial
- InChI and SMILES identifiers for chemical structures
- Identifier mapping with BridgeDb
Pathway Drawing
Check out the PathVisio YouTube Channel for videos to help you use the software.
- The pathway drawing tool PathVisio can be downloaded here
- An introduction for pathway drawing in PathVisio can be found at the Wikipathways Academy
- Pathway Drawing Tutorials are available
- Pathway Curation
Pathway Analysis
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Tutorials
Network Analysis
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Tutorials
- Network Biology Practical
- Using network analysis to study the molecular and regulatory mechanisms involved in RETT Syndrome
- Using network analysis to study the molecular and regulatory mechanisms involved in lung cancer
- Biological Network Data Tutorial
- Network Inference Tutorial
- Network Algorithms Tutorial
- Disease Mechanisms Network Analysis Practical
Nanosafety research
- Ontologies
- Data management