A set of SPARQL examples that are used in different TGX resources
License: https://www.gnu.org/licenses/gpl-3.0
Uses method in: https://github.com/WDscholia/scholia/tree/master/scholia/app/templates/gene_variants.sparql
Gene aspect: variants
PREFIX bd: <http://www.bigdata.com/rdf#>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX wikibase: <http://wikiba.se/ontology#>
PREFIX target: <http://www.wikidata.org/entity/Q14860818>
SELECT
?variant ?variantLabel ?variantDescription
?types
WITH {
SELECT ?variant ?type
WHERE {
?variant wdt:P3433 target:
}
} AS %variants
WITH {
SELECT ?variant (GROUP_CONCAT(?type_label; separator=" // ") AS ?types) WHERE {
INCLUDE %variants
OPTIONAL {
?variant wdt:P279 ?variantType .
?variantType rdfs:label ?type_label . FILTER (lang(?type_label) = 'en')
}
}
GROUP BY ?variant
} AS %result
WHERE {
INCLUDE %result
SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],mul,en". }
}
graph TD