A set of SPARQL examples that are used in different TGX resources
License: https://www.gnu.org/licenses/gpl-3.0
Uses method in: https://github.com/WDscholia/scholia/tree/master/scholia/app/templates/chemical_found-in-taxon.sparql
Chemical aspect: found in taxon
PREFIX bd: <http://www.bigdata.com/rdf#>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX pr: <http://www.wikidata.org/prop/reference/>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX wikibase: <http://wikiba.se/ontology#>
PREFIX target: <http://www.wikidata.org/entity/Q2270>
SELECT DISTINCT ?taxon ?taxonLabel (CONCAT("/taxon/", SUBSTR(STR(?taxon), 32)) AS ?taxonUrl)
?source ?sourceLabel (CONCAT("/work/", SUBSTR(STR(?source), 32)) AS ?sourceUrl)
?doi WHERE {
VALUES ?chemical { target: }
?chemical p:P703 ?taxonStatement .
?taxonStatement ps:P703 ?taxon .
OPTIONAL {
?taxonStatement prov:wasDerivedFrom/pr:P248 ?source .
OPTIONAL { ?source wdt:P356 ?doi . }
}
SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],mul,en". }
} ORDER BY ASC(?taxonLabel)
LIMIT 250
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v2("?chemical")
v6("?doi"):::projected
v5("?source"):::projected
v8("?sourceUrl")
v4("?taxon"):::projected
v1("?taxonLabel"):::projected
v3("?taxonStatement")
v7("?taxonUrl")
a1((" "))
c7([http://www.bigdata.com/rdf#serviceParam]):::iri
c9(["#91;AUTO_LANGUAGE#93;,mul,en"]):::literal
bind0[/VALUES ?chemical/]
bind0-->v2
bind00([http://www.wikidata.org/entity/Q2270])
bind00 --> bind0
v2 --"p:P703"--> v3
v3 --"p:statement/P703"--> v4
subgraph optional0["(optional)"]
style optional0 fill:#bbf,stroke-dasharray: 5 5;
v3 -."prov:wasDerivedFrom".-> a1
a1 --"p:reference/P248"--> v5
subgraph optional1["(optional)"]
style optional1 fill:#bbf,stroke-dasharray: 5 5;
v5 -."p:direct/P356".-> v6
end
end
subgraph s1["http://wikiba.se/ontology#label"]
style s1 stroke-width:4px;
c7 --"wikibase:language"--> c9
end
bind1[/"concat('/taxon/',substring(str(?taxon),'32^^xsd:integer'))"/]
v4 --o bind1
bind1 --as--o v7
bind2[/"concat('/work/',substring(str(?source),'32^^xsd:integer'))"/]
v5 --o bind2
bind2 --as--o v8