imd-pathway-curation

WikiPathways WP5275

• WikiPathways: WP5275 (classic)
• Species: Homo sapiens
• Scholia: WP5275

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 2
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 7
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 2

https://identifiers.org/wikipathways/WP5275 has an metabolite not linked to an interaction: DHAP
https://identifiers.org/wikipathways/WP5275 has an metabolite not linked to an interaction: Fatty acid

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 7

http://classic.wikipathways.org/instance/WP5275_r128241 "RCDP3" with graphId da0aa
http://classic.wikipathways.org/instance/WP5275_r128241 "RCDP5" with graphId daffe
http://classic.wikipathways.org/instance/WP5275_r128241 "RCDP1" with graphId ccfff
http://classic.wikipathways.org/instance/WP5275_r128241 "RCDP4" with graphId b22a6
http://classic.wikipathways.org/instance/WP5275_r128241 "Zellweger
syndrome" with graphId c65d7
http://classic.wikipathways.org/instance/WP5275_r128241 "RCDP2" with graphId b12d0
http://classic.wikipathways.org/instance/WP5275_r128241 "Neonatal 
adrenoleukodystrophy" with graphId b81a0