imd-pathway-curation

WikiPathways WP5193

• WikiPathways: WP5193
• Scholia: WP5193
• WPRDF file: wp/Human/WP5193.ttl
• GPMLRDF file: wp/gpml/Human/WP5193.ttl
• SBML file: sbml/WP5193.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 7
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 18
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 110
• Number of assertions: 220
• Number of fails: 2

Fails

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 7

https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: Farnesyl pyrophosphate
https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: Geranyl-PP
https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: (R)-Mevalonic acid 5-phosphate
https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: Lathosterol
https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: cholesterol
https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: 7-Dehydrocholesterol
https://identifiers.org/wikipathways/WP5193 has an metabolite not linked to an interaction: (r)-mevalonic acid-5-pyrophosphate

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 18

http://www.wikipathways.org/instance/WP5193_r122440 "ABS" with graphId a241c
http://www.wikipathways.org/instance/WP5193_r122440 "MEVA

" with graphId ee008
http://www.wikipathways.org/instance/WP5193_r122440 "POROK1" with graphId d553e
http://www.wikipathways.org/instance/WP5193_r122440 "SQSD" with graphId ac51b
http://www.wikipathways.org/instance/WP5193_r122440 "POROK7" with graphId f5a14
http://www.wikipathways.org/instance/WP5193_r122440 "MSMO1" with graphId fd992
http://www.wikipathways.org/instance/WP5193_r122440 "desmosterolosis" with graphId b32a4
http://www.wikipathways.org/instance/WP5193_r122440 "HEM" with graphId ffc42
http://www.wikipathways.org/instance/WP5193_r122440 "APMR4" with graphId acba7
http://www.wikipathways.org/instance/WP5193_r122440 "POROK9" with graphId eaa00
http://www.wikipathways.org/instance/WP5193_r122440 "lathosterolosis
" with graphId bf3a8
http://www.wikipathways.org/instance/WP5193_r122440 "CYP51 deficiency
" with graphId a1f73
http://www.wikipathways.org/instance/WP5193_r122440 "HYPT14" with graphId b249d
http://www.wikipathways.org/instance/WP5193_r122440 "CHILD" with graphId db617
http://www.wikipathways.org/instance/WP5193_r122440 "CDPX2" with graphId fc891
http://www.wikipathways.org/instance/WP5193_r122440 "CTRCT44" with graphId a77d5
http://www.wikipathways.org/instance/WP5193_r122440 "SLOS" with graphId e8cfd
http://www.wikipathways.org/instance/WP5193_r122440 "CK" with graphId fc027