imd-pathway-curation

WikiPathways WP5123

• WikiPathways: WP5123 (classic)
• Species: Homo sapiens
• Scholia: WP5123

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 14
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .x we found 1 problem(s):
    • Likely diseases without identifiers: 3
  • omimIdentifiers: .. all OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests
  • keggWithoutMapping: .. all OK!
  • pubchemCIDWithoutMapping: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • casWithoutMapping: .. all OK!
  • wikDataTypo: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • chebiWithoutMapping_Reactome: .. all OK!
  • chebiWithoutMapping: .x we found 1 problem(s):
    • ChEBI identifiers without Wikidata mappings: 12
  • inchikeyWithoutMapping: .. all OK!
  • retiredIdentifiers: .. all OK!

Summary

• Number of test classes: 22
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 3

Fails

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 14

https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C12 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C14 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C17 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: CoASH
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: Trans-D2-enoyl-CoA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C15 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C18 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C7 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C10 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C8 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C4 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C16 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C9 FA
https://identifiers.org/wikipathways/WP5123 has an metabolite not linked to an interaction: C6 FA

IEMPathwayTests.diseasesHaveIdentifiers

Likely diseases without identifiers: 3

https://identifiers.org/wikipathways/WP5123 "NADH + H+" does not have an identifier
https://identifiers.org/wikipathways/WP5123 "NAD+" does not have an identifier
https://identifiers.org/wikipathways/WP5123 "H2O" does not have an identifier

ChEBI identifier without a match in Wikidata

ChEBI identifiers without Wikidata mappings: 12

https://identifiers.org/chebi/CHEBI:140940 (C14 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:140942 (C15 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:140943 (C16 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:140945 (C17 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:140947 (C18 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:141070 (C7 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:141071 (C8 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:141072 (C9 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:141075 (C12 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:78115 (C4 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:78116 (C6 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 
https://identifiers.org/chebi/CHEBI:78118 (C10 FA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5123_r135973 ; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping