imd-pathway-curation

WikiPathways WP4224

• WikiPathways: WP4224 (classic)
• Species: Homo sapiens
• Scholia: WP4224

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 6
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .x we found 1 problem(s):
    • OMIM links should start with “https://omim.org/entry/”: 1
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 6

https://identifiers.org/wikipathways/WP4224 has an metabolite not linked to an interaction: ADP
https://identifiers.org/wikipathways/WP4224 has an metabolite not linked to an interaction: HCO3 -
https://identifiers.org/wikipathways/WP4224 has an metabolite not linked to an interaction: H2O
https://identifiers.org/wikipathways/WP4224 has an metabolite not linked to an interaction: P(i)
https://identifiers.org/wikipathways/WP4224 has an metabolite not linked to an interaction: Asp
https://identifiers.org/wikipathways/WP4224 has an metabolite not linked to an interaction: Gln

IEMPathwayTests.omimIdentifiers

OMIM links should start with “https://omim.org/entry/”: 1

https://identifiers.org/wikipathways/WP4224 "Xanthinuria, type II" has unexpected OMIM href: http://omim.org/entry/603592